Genopole Evry


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Les ARN non-codants et la plasticité développementale de la racine

Articles dans des journaux à comité de lecture

Publications 2016

- Swarup R., Crespi M., Bennett MJ. (2016). One Gene, Many Proteins : Mapping Cell-Specific Alternative Splicing in Plants , Developmental Cell 39(4)383-85. doi : 10.1016/j.devcel.2016.11.002.

- Zheng Y., Hivrale V., Zhang X., Valliyodan B., Lelandais-Brière C., Farmer AD., May GD., Crespi M., HT. Nguyen & R. Sunkar (2016). Small RNA profiles in soybean primary root tips under water déficit. BMC Systems Biology 10:374. doi : 10.1186/s12918-016-0374-0.

- Blein T., Laufs P. (2016). MicroRNAs (miRNAs) and Plant Development. In : eLS (p. 1-11). USA : John Wiley and Sons Ltd. doi:10.1002/9780470015902.a0020106.pub2.

- Conti G., Zavallo D., Venturuzzi AL, Rodriguez MC, Crespi M., Asurmendi S. (2016). TMV induces RNA decay pathways to modulate gene silencing and disease symptoms. Plant J. 2016 Sep 6. doi : 10.1111/tpj.13323. [Epub ahead of print] PMID:27599263.

- Veluchamy A., Jégu T., Ariel F., Latrasse D., Mariappan K.G., Kim S.K., Crespi M., Hirt H., Bergounioux C., Raynaud C., Benhamed M. (2016). LHP1 Regulates H3K27me3 Spreading and Shapes the Three-Dimensional Conformation of the Arabidopsis Genome. PLoS ONE 11(7) : e0158936. doi:10.1371/journal.pone.0158936.

- Rodriguez-Granados NY., Ramirez-Prado JS., Veluchamy A., Latrasse D., Raynaud C., Crespi M., Ariel F., Benhamed M. (2016). Put your 3D glasses on : plant chromatin is on show. J Exp Bot. 67(11):3205-21. doi : 10.1093/jxb/erw168.

- Hanemian M., Barlet X., Sorin C., Yadeta K. A., Keller H., Favery B., Simon R., Thomma BP., Hartmann C., Crespi M., Marco Y., Tremousaygue D., Deslandes L. (2016). Arabidopsis CLAVATA1 and CLAVATA2 receptors contribute to Ralstonia solanacearum pathogenicity through a miR169-dependent pathway. New Phytol. 211(2):502-15. doi : 10.1111/nph.13913.

- Lelandais Briere C., Moreau J., Hartmann C., Crespi M. (2016). Noncoding RNAs, emerging regulators in root endosymbioses. Mol Plant Microbe Interact. 29(3):170-180. doi : 10.1094/MPMI-10-15-0240-FI.

- Tran Vdu T., Souiai O., Romero-Barrios N., Crespi M., Gautheret D. (2016). Detection of generic differential RNA processing events from RNA-seq data. RNA Biol. 13(1):59-67. doi : 10.1080/15476286.2015.1118604.

- Elvira-Matelot, E., Bardou, F., Ariel, F., Jauvion, V., Bouteiller, N., Le Masson, I., Cao, J., Crespi, M., Vaucheret, H. (2016). The nuclear ribonucleoprotein SmD1 interplays with splicing, RNA quality control, and post-transcriptional gene silencing in Arabidopsis. Plant Cell 28(2):426-38. doi : 10.1105/tpc.15.01045.

- Carlotto N., Wirth S., Furman N., Ferreyra Solari N., Ariel F., Crespi M., Kobayashi K. (2016). The chloroplastic DEVH-box helicase ISE2 involved in plasmodesmata regulation is required for group II intron splicing. Plant Cell Environ. 39(1):165-73 doi : 10.1111/pce.12603.


Publications 2015

- Jégu T, Domenichini S, Blein T, Ariel F, Christ A, Kim SK, Crespi M, Boutet-Mercey S, Mouille G, Bourge M, Hirt H, Bergounioux C, Raynaud C, Benhamed M. (2015). A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture. PLoS One. 10(10):e0138276.

- Baudin M, Laloum T, Lepage A, Ripodas C, Ariel F, Frances L, Crespi M, Gamas PC, Blanco FA, Zanetti ME, de Carvalho-Niebel F, Niebel A. (2015) . A phylogenetically conserved group of NF-Y transcription factors interact to control nodulation in legumes. Plant Physiol. 169(4):2761-73. doi : 10.1104/pp.15.01144.

- Ariel F., Romero-Barrios N., Jégu T., Benhamed M., Crespi M. (2015). Battles and hijacks : noncoding transcription in plants.Trends Plant Sci.20(6):362-71.
doi : 10.1016/j.tplants.2015.03.003.

- Martínez de Alba A.E., Moreno A.B., Gabriel M., Mallory A.C., Christ A., Bounon R., Balzergue S., Aubourg S., Gautheret D., Crespi M.D., Vaucheret H., Maizel A. (2015). In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs. Nucl. Acids Res. 43(5):2902-13.
doi : 10.1093/nar/gkv119.


Publications 2014

- Formey, D., E. Sallet, C. Lelandais-Brière, C. Ben, P. Bustos-Sanmamed, A. Niebel, F. Frugier, JP Combier, F. Debellé, C. Hartmann, J. Poulain, F. Gavory, P. Wincker, C. Roux, L. Gentzbittel, J. Gouzy & M. Crespi (2014). The small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome. Genome Biology 15:457. doi:10.1186/s13059-014-0457-4.

- Bardou, F., F. Ariel, CG. Simpson, N. Romero-Barrios, P. Laporte, S. Balzergue, JW. Brown, M. Crespi. (2014). Long noncoding RNA modulates alternative splicing regulators in Arabidopsis. Dev Cell. 30(2):166-76. doi:10.1016/j.devcel.2014.06.017.

- Bustos-Sanmamed, P., E. Hudik, C. Laffont, C. Reynes, E. Sallet, J. Wen, KS. Mysore, A.C. Camproux, C. Hartmann, J. Gouzy, F. Frugier, M. Crespi, C. Lelandais-Brière (2014). A Medicago truncatula rdr6 allele impairs transgene silencing and endogenous phased siRNA production but not development. Plant Biotechnol J. doi : 10.1111/pbi.12230.

- Ariel, F., T. Jegu, D. Latrasse, N. Romero-Barrios, A. Christ, M. Benhamed, M. Crespi (2014). Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop. Mol Cell. 55(3):383-96. doi : 10.1016/j.molcel.2014.06.011.

- Sorin,C., M. Declerck, A. Christ, T. Blein, L. Ma, C. Lelandais-Brière, M. F. Njo, T. Beeckman, M. Crespi & C. Hartmann (2014). New Phytol. 202(4):1197-1211. doi : 10.1111/nph.12735.

- Jégu,T., D. Latrasse, M. Delarue, H. Hirt, S. Domenichini, F. Ariel, M. Crespi, C. Bergounioux, C. Raynaud & M. Benhamed (2014).The BAF60 Subunit of the SWI/SNF Chromatin-Remodeling Complex Directly Controls the Formation of a Gene Loop at FLOWERING LOCUS C in Arabidopsis. Plant Cell. 26(2):538-51. doi : 10.1105/tpc.113.114454.

- Nisa-Martínez, R., P. Laporte, J. I. Jiménez-Zurdo, F. Frugier, M. Crespi & N. Toro(2014). Localization of a Bacterial Group II Intron-Encoded Protein in Eukaryotic Nuclear Splicing-Related Cell Compartments. PLoS One. doi : 10.1371/journal.pone.0084056.


Publications 2013

- Bustos-Sanmamed, P., G. Mao, Y. Deng, M. Elouet, G. A. Khan, J. Bazin, M. Turner, S. Subramanian, O. Yu, M. Crespi & C. Lelandais-Brière (2013). Overexpression of miR160 affects root growth and nitrogen-fixing nodule number in Medicago truncatula. Functional Plant Biology 40(12) 1208-1220.

- Bustos-Sanmamed, P., J. Bazin, C. Hartmann, M. Crespi, C. Lelandais-Brière (2013). Small RNA pathways and diversity in model legumes : lessons from genomics. Front Plant Sci. 4:236. doi : 10.3389/fpls.2013.00236.

- Torres-Quesada, O., V. Millán, R. Nisa-Martínez, F. Bardou, M. Crespi, N. Toro & J.I. Jiménez-Zurdo (2013). Independent activity of the homologous small regulatory RNAs AbcR1 and AbcR2 in the legume symbiont Sinorhizobium meliloti. PLoS One 8(7):e68147. doi : 10.1371/journal.pone.0068147.

- Bazin, J., G.A., Khan, J.P. Combier, P. Bustos-Sanmamed, J.M. Debernardi, R. Rodriguez, C. Sorin, J. Palatnik, C. Hartmann, M. Crespi, C. Lelandais-Briere (2013). miR396 affects mycorrhization and root meristem activity in the legume Medicago truncatula. Plant J. 74(6):920-34. doi : 10.1111/tpj.12178.

- Moreno, A.B., A.E. Martínez de Alba, F. Bardou, M. Crespi, H. Vaucheret, A. Maizel & A.C. Mallory (2013). Cytoplasmic and nuclear quality control and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plants. Nucleic Acids Research. 41(8):4699-708. doi : 10.1093/nar/gkt152.

- Christ, A., I. Maegele, N. Ha, H.H. Nguyen, M.D. Crespi & A. Maizel (2013). In silico identification and in vivo validation of a set of evolutionary conserved plant root-specific cis-regulatory elements. Mechanisms of development 130(1):70-81. doi : 10.1016/j.mod.2012.03.002

- Latrasse, D., T. Jégu, P.H. Meng, C. Mazubert, E. Hudik, M. Delarue, C. Charon, M. Crespi, H. Hirt, C. Raynaud, C. Bergounioux & M. Benhamed (2013). Dual function of MIPS1 as a metabolic enzyme and transcriptional regulator. Nucleic Acids Research 41(5):2907-17. doi : 10.1093/nar/gks1458.

- Reynoso, M.A., F.A. Blanco, J. Bailey-Serres, M. Crespi & M.E. Zanetti (2012). Selective recruitment of mRNAs and miRNAs to polyribosomes in response to rhizobia infection in Medicago truncatula. Plant Journal 73(2):289 -301. doi : 10.1111/tpj.12033.


Publications 2010 - 2012

- Ariel, F., M. Brault-Hernandez, C. Laffont, E. Huault, M. Brault, J. Plet, M. Moison, S. Blanchet, J.L. Ichanté, M. Chabaud, S. Carrere, M. Crespi, R.L. Chan & F. Frugier (2012). Two direct targets of cytokinin signaling regulate symbiotic nodulation in Medicago truncatula. The Plant Cell 24(9):3838-52.

- Bazin, J., P. Bustos-Sanmamed, C. Hartmann, C. Lelandais-Brière & M. Crespi (2012). Complexity of miRNA-dependent regulation in root symbiosis. Philosophical transactions of the Royal Society of London. Series B, Biological Sciences 367(1595):1570-9.

- Jouannet, V., A.B. Moreno, T. Elmayan, H. Vaucheret, M.D. Crespi & A. Maizel (2012). Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis. The EMBO Journal 31(7):1704-13.

- Lelandais-Brière, C., C. Sorin, M. Crespi & C. Hartmann (2012). [Non-coding RNAs involved in plant responses to environmental constraints]. Biologie Aujourd’hui 206(4):313-22.

- Zahaf, O., S. Blanchet, A. De Zélicourt, B. Alunni, J. Plet, C. Laffont, L. De Lorenzo, S. Imbeaud, J.L. Ichanté, A. Diet, M. Badri, A. Zabalza, E.M. González, H. Delacroix, V. Gruber, F. Frugier & M. Crespi (2012). Comparative transcriptomic analysis of salt adaptation in roots of contrasting Medicago truncatula genotypes. Molecular Plant 5(5):1068-81.

- De Zélicourt, A., A. Diet, J. Marion, C. Laffont, F. Ariel, M. Moison, O. Zahaf, M. Crespi, V. Gruber & F. Frugier (2012). Dual involvement of a Medicago truncatula NAC transcription factor in root abiotic stress response and symbiotic nodule senescence. Plant Journal 70(2):220-30.

- Bardou, F., F. Merchan, F. Ariel & M. Crespi (2011). Dual RNAs in plants. Biochimie 93(11):1950-4.

- Khan, G.A., M. Declerck, C. Sorin, C. Hartmann, M. Crespi & C. Lelandais-Brière (2011). microRNAs as regulators of root development and architecture. Plant Mol. Biol. 77(1-2):47-58.

- Plet, J., A. Wasson, F. Ariel, C. Le Signor, D. Baker, U. Mathesius, M. Crespi & F. Frugier (2011). MtCRE1-dependent cytokinin signaling integrates bacterial and plant cues to coordinate symbiotic nodule organogenesis in Medicago truncatula. Plant Journal 65(4):622-33.

- Hirsch, J., J. Misson, P. A. Crisp, P. David, V. Bayle, G. M. Estavillo, H. Javot, S. Chiarenza, A. C. Mallory, A. Maizel, M. Declerck, B. J. Pogson, H. Vaucheret, M. Crespi, T. Desnos, M.C. Thibaud, L. Nussaume & E. Marin (2011). A novel fry1 allele reveals the existence of a mutant phenotype unrelated to 5’->3’ exoribonuclease (XRN) activities in Arabidopsis thaliana roots. PLOS one 6(2):e16724.

- D’haeseleer K, G. Den Herder, C. Laffont, J. Plet, V. Mortier, C. Lelandais-Brière, S. De Bodt, A. De Keyser, M. Crespi, M.Holsters, F. Frugier & S. Goormachtig (2011). Transcriptional and post-transcriptional regulation of a NAC1 transcription factor in Medicago truncatula roots. New Phytol. 191(3):647-61.

- Bustos-Sanmamed P., A. Tovar-Mendeza, M. Crespi, S. Sato., S. Tabata & M. Becana (2011). Regulation of nonsymbiotic and truncated leghemoglobin genes of Lotus japonicus in plants organs and in response to nitric oxide and hormones. New Phytologist 189(3):765-76.

- Ariel, F.D., A. Diet, M. Crespi & R. Chan (2010). The LOB-like transcription factor MtLBD1 controls Medicago truncatula root architecture under salt stress. Plant Signaling and Behaviour 5(12):1666-8.

- Ariel, F., A. Diet, M. Verdenaud, V. Gruber, F. Frugier, R. Chan & M. Crespi (2010). Environmental regulation of lateral root emergence in Medicago truncatula requires the HD-Zip I transcription factor HB1. Plant Cell 22(7) : 2171-83.

- Charon, C., A. B. Moreno, F. Bardou & M. Crespi (2010). Non-protein-coding RNAs and their interacting RNA-binding proteins in the plant cell nucleus. Molecular Plant 3(4):729-39 ; Special issue on Nucleus Biology and Signalling

- Laffont, C., S. Blanchet, C. Lapierre, L. Brocard, P. Ratet, M. Crespi, U. Mathesius & F. Frugier (2010). The Compact Root Architecture 1 gene regulates lignification, flavonoid production and polar auxin transport in Medicago truncatula. Plant Physiology 153(4):1597-607.

- Jouannet, V., E. Marin, A. Herz, A.S. Lokerse, D. Weijers, H. Vaucheret, L. Nussaume, M. D. Crespi & A. Maizel (2010). miR390, TAS3 ta-siRNAs and their ARF targets define an auto-regulatory network quantitatively controlling lateral root growth. Plant Cell 22(4):1104-17.

- Laporte, P., B. Satiat-Jeunemaitre, I. Velasco, T. Csorba, W. Van de Velde, A. Campalans, J. Burgyan, M. Arevalo-Rodriguez & M. Crespi (2010). A novel RNA-binding peptide regulates the establishment of the Medicago truncatula - Sinorhizobium meliloti nitrogen-fixing symbiosis. Plant Journal 62(1):24-38.

- Naya, L., G. Khan, C. Sorin, C. Hartmann, M. Crespi & C. Lelandais-Brière (2010). Cleavage of a non-conserved target by a specific miR156 isoform in root apexes of Medicago truncatula. Plant Signaling and Behaviour 5(3):328-331.

- Lelandais-Brière, C., C. Sorin, M. Declerck, A. Benslimane, M. Crespi & C. Hartmann (2010). Small RNA diversity in plants and its impact in development. Current Genomics 11(1):14-23.


Chapitres de livres


- Araújo, S.S., S. Beebe, M. Crespi, B. Delbreil, E.M. González, V. Gruber, I. Lejeune-Henaut, W. Link, M.J. Monteros, E. Prats, I. Rao, V. Vadez & M.C. Vaz Patto (2014). Abiotic stress responses in legumes : Strategies used to cope with environmental challenges. Critical Reviews in Plant Sciences (in press).



- Bustos-Sanmamed, P., C. Laffont, F. Frugier, C. Lelandais-Brière & M. Crespi (2013). Analyzing protein distribution in plant tissues using “whole-mount” immunolocalization. Methods in Molecular Biology (Clifton, N.J.) 959:317-22. doi : 10.1007/978-1-62703-221-6_21.

- Bustos-Sanmamed, P., C. Laffont, F. Frugier, C. Lelandais-Brière & M. Crespi (2013). Analyzing small and long RNAs in plant development using non-radioactive in situ hybridization. Methods in Molecular Biology (Clifton, N.J.) 959:303-16. doi : 10.1007/978-1-62703-221-6_20.


2010 - 2012

- Gruber, V., O. Zahaf, A. Diet., A. de Zélicourt, L. de Lorenzo & M. Crespi (2011). Impact of the environment on root architecture in dicotyledoneous plants. In : Root Genomics, eds. A. Costa de Oliveira and R. K. Varshney (eds), pp 113-132. Springer Verlag.

- Jouannet, V. & M. Crespi (2010). Long non-protein-coding RNAs in plants. In “Long non-coding RNAs” Series in Progress of Mol. And cell. Biology. Edited by D. Ugarkovic, Springer Verlag

- Gonzalez-Rizzo, S., P. Laporte, M. Crespi & Frugier, F. (2010). Legume root architecture : a peculiar root system. In : Root Development. T. Beeckman (ed), pp 239-287. Blackwell Publishing.